General Users

• General Overview
  • Login
    • File based and/or LDAP authentication
    • SWITCHaai authentication
• Navigation menu
  • Menu functionalities
• ELN types
  • Standard types
    • Object types
    • Collection types
    • Dataset types
  • Basic default types
  • Life science types
• Inventory Of Materials And Methods
  • Customise Collection View
  • Register single entries in a Collection
  • Batch register entries in a Collection
    • Batch registration via Excel template file
      • Codes
      • Controlled vocabularies
      • Assign parents
      • Date format
    • Register storage positions and samples in the same XLS file
    • Batch registration via TSV template file
      • Rules to follow to fill in the template .tsv file
    • Advantages of XLS batch registration vs the old batch registration
  • Batch register entries in several Collections
    • XLS Batch Register Objects
    • TSV Batch Register Objects
  • Batch update entries in a Collection
    • XLS Batch Update Objects
    • TSV Batch Update Objects
  • Batch update entries in several Collections
    • XLS Batch Update Objects
    • TSV Batch Update Objects
  • Register Protocols in the Methods Inventory
    • LINKS TO SAMPLES, MATERIALS, OTHER PROTOCOLS
• Managing Storage Of Samples
  • Allocate storage positions to samples
    • Register storage position for a single sample
      • Add additional metadata to storage positions
    • Batch register storage positions
      • XLS Batch Registration
      • Batch Registration with TSV file
  • Batch update storage positions
  • Delete storage positions
    • Delete single storage positions
    • Remove one of multiple positions in the same box
    • Delete multiple storage positions
  • Overview of lab storages
    • Change storage position of samples
• Barcodes and QR codes
  • Barcodes and QR codes
    • Barcodes for individual samples
    • Generate batches of barcodes / QR codes
    • Scan barcodes from mobile devices
  • Printer and Barcode Scanner Requirements
    • Printers
      • Printer Configuration
      • Printer testing
      • Printer Advice before purchasing
      • Tested Printers
    • Scanners
      • Scanner Configuration
      • Scanner testing
      • Scanner Advice before purchasing
      • Tested Scanners
• Lab Notebook
  • Home Space
  • Project
    • When to use Projects:
  • Experiment/Collection
    • Difference between Default Experiment and Collection.
  • Entry
  • Experimental Step
  • Datasets
    • Datasets tables
    • Move Datasets
  • Move one Experiment/Collection to a different Project
  • Project Overview
  • Edit and Delete Projects, Experiments, Experimental Steps
  • Sharing Lab Notebooks and Projects
• Data Upload
  • Data upload via web UI
  • Data upload via dropbox
    • Dropbox with markerfile
      • How to create the Marker file in Windows
      • How to create the Marker file on Mac
    • Dropbox monitor
    • Registration of metadata for datasets via dropbox
• Export
  • Export to File
    • Export Lab Notebooks & Inventory Spaces
    • 1. Import-compatible export of a Space selecting all options
    • 2. Non import-compatible export of a Space selecting all options
  • Export to Zenodo
    • Create Zenodo Personal Access Token
    • Save Zenodo Personal Access Token in openBIS
    • Export data to Zenodo
  • Export data to Zenodo in a multi-group instance
  • Export to ETH Research Collection
  • Export data to the ETH Research Collection in a multi-group instance
• Data archiving
  • Dataset archiving
    • Dataset archiving helper tool
  • Dataset unarchiving
    • Dataset unarchiving helper tool
• Search
  • Advanced search
    • Search for: All
    • Search for: Experiment/Collection
    • Search for: Object
    • Search for: Dataset
    • Search for: specific Object Type (e.g Experimental Step)
    • Search Collection
  • Search
    • Global search
    • BLAST search
    • Data Set File search
  • Save and reuse searches
• Tables
  • Filters
  • Sorting
  • Exports
  • Columns
    • Spreadsheets and text fields
  • Selection of entries in table
• Additional Functionalities
  • Visualise Relationships
  • Copy Objects
  • Move Objects
    • Move from entry form
    • Move from Collection Table
  • Templates
  • Browse Entries by Type
  • Print PDF
  • Trashcan
  • Visualize Available Storage Space
  • Vocabulary Browser
  • Freeze Entities
    • How to freeze an entity
  • Custom Imports
  • Entity history
    • History table for Collections
    • History table for Objects
    • History table for Datasets
  • Spreadsheet
  • Session Token
• Managing Lab Stocks and Orders
  • STOCK CATALOG
    • Building the catalog of products and suppliers
      • Catalog of suppliers
      • Catalog of products
    • Creating requests for products to order
  • STOCK ORDERS
    • Processing product orders from requests
• Tools For Analysis Of Data Stored In Openbis
  • Jupyter Notebooks
    • How to use Jupyter notebooks from openBIS
    • Overview of Jupyter notebook opened from openBIS.
      • What to do in case of invalid session token
    • Using a local Jupyter installation with openBIS
  • MATLAB toolbox