Advanced Configuration

• openBIS Server Configuration
  • Application Server Configuration
    • Database Settings
  • Data Store Server Configuration
• Configuration properties by module
• CORE MODULES
  • AS MODULES
    • Database Configuration (Required)
    • Session Configuration (Required)
    • Mail server Configuration (Optional)
    • Exports Configuration (Optional)
    • Imports Configuration (Optional)
    • Authentication Configuration (Required)
    • Authorization Configuration (Required)
    • Hibernate Search Configuration (Optional)
    • Support Related Configuration (Optional)
    • AutoArchiver Configuration (Optional)
    • Usage Reporting (Optional)
    • User Management (Optional, Required for multi-group setups)
    • Miscellaneous Configuration (Optional)
    • V3 API Configuration (Optional)
  • DSS MODULES
    • Core Configuration (Required)
    • Database Configuration (Required)
    • Mail server Configuration (Optional)
    • Mail server Configuration (Optional)
    • Dropbox Configuration (Optional)
    • Post Registration Task (Optional)
    • Processing Plugins (Optional)
    • Maintenance Plugins (Optional)
    • Archiver Configuration (Optional)
    • Archiving By Request Configuration (Optional)
    • Miscellaneous Configuration (Optional)
    • Screening Configuration (Optional)
  • PLUGIN MODULES
    • ELN
      • AS PROPERTIES
      • DSS PROPERTIES
    • ADMIN
      • AS PROPERTIES
      • DSS PROPERTIES
    • DATASET-UPLOADER
      • AS PROPERTIES
      • DSS PROPERTIES
    • DROPBOX-MONITOR
      • AS PROPERTIES
      • DSS PROPERTIES
    • IMAGING
      • AS PROPERTIES
      • DSS PROPERTIES
    • MONITORING-SUPPORT
      • AS PROPERTIES
      • DSS PROPERTIES
    • OPENBIS-SYNC
      • AS PROPERTIES
      • DSS PROPERTIES
    • SEARCH-STORE
      • AS PROPERTIES
      • DSS PROPERTIES
• Optional Application Server Configuration
  • The base URL for Web client access to the application server.
  • Export data limit in bytes, default to 10Gib
  • Deleted Entity History
  • Login Page - Banners
  • Client Customization
    • Configuration
    • Web client customizations
    • Data Set Upload Client Customizations
      • Examples
    • Full web-client.properties Example
  • Configuring File Servlet
  • Changing the Capability-Role map
    • Capability Role Map for V3 API
• Optional Datastore Server Configuration
  • Configuring DSS Data Sources
  • SFTP configuration
• Authentication Systems
  • The default authentication configuration
  • The file based authentication system
  • The interface to LDAP
  • Authentication Cache
  • Anonymous Login
  • Single Sign On Authentication
• Authorization
• Maintenance Tasks
  • Maintenance Task Classification
  • Introduction
  • Feature
    • ArchivingByRequestTask
    • AutoArchiverTask
    • BlastDatabaseCreationMaintenanceTask
    • DeleteDataSetsAlreadyDeletedInApplicationServerMaintenanceTask
    • ReleaseDataSetLocksHeldByDeadThreadsMaintenanceTask
    • DeleteFromArchiveMaintenanceTask
    • DeleteFromExternalDBMaintenanceTask
    • EventsSearchMaintenanceTask
    • ExperimentBasedArchivingTask
    • HierarchicalStorageUpdater
    • MultiDataSetDeletionMaintenanceTask
    • MultiDataSetUnarchivingMaintenanceTask
    • MultiDataSetArchiveSanityCheckMaintenanceTask
    • PathInfoDatabaseFeedingTask
    • PostRegistrationMaintenanceTask
    • RevokeUserAccessMaintenanceTask
    • UserManagementMaintenanceTask
  • Consistency and other Reports
    • DataSetArchiverOrphanFinderTask
    • DataSetAndPathInfoDBConsistencyCheckTask
    • MaterialExternalDBSyncTask
      • Mapping File
    • UsageReportingTask
    • PersonalAccessTokenValidityWarningTask
  • Consistency Repair and Manual Migrations
    • BatchSampleRegistrationTempCodeUpdaterTask
    • CleanUpUnarchivingScratchShareTask
    • DataSetRegistrationSummaryTask
    • DynamicPropertyEvaluationMaintenanceTask
    • DynamicPropertyEvaluationTriggeredByMaterialChangeMaintenanceTask
    • FillUnknownDataSetSizeInOpenbisDBFromPathInfoDBMaintenanceTask
    • PathInfoDatabaseChecksumCalculationTask
    • PathInfoDatabaseRefreshingTask
    • RemoveUnusedUnofficialTermsMaintenanceTask
    • ResetArchivePendingTask
    • SessionWorkspaceCleanUpMaintenanceTask
    • MaterialsMigration
  • Microscopy Maintenance Tasks
    • MicroscopyThumbnailsCreationTask
    • DeleteFromImagingDBMaintenanceTask
  • Proteomics Maintenance Tasks
• User Group Management for Multi-groups openBIS Instances
  • Introduction
  • Configuration
    • Static Configurations
      • AS service.properties
      • DSS service.properties
    • Dynamic Configurations
      • Section globalSpaces
      • Section commonSpaces
      • Section commonSamples
      • Section commonExperiments
      • Section instanceAdmins (since version 20.10.6)
      • Section groups
  • What UserManagementMaintenanceTask does
  • Content of the Report File sent by UsageReportingTask
  • Common use cases
    • Adding a new group
    • Making a user an group admin
    • Remove a user from a group
    • Adding more disk space
  • Manual configuration of Multi-groups openBIS instances
    • Masterdata and entities definition
      • Spaces
      • Projects
      • Collections
      • Objects
    • Rights management
• Archiving Datasets
  • Manual archiving
    • openBIS core UI
    • ELN-LIMS
  • Automatic archiving
    • Archiving Policies
      • ch.systemsx.cisd.etlserver.plugins.GroupingPolicy
• Multi data set archiving
  • Introduction
  • Important technical details
  • Workflows
    • Simple workflow
    • Staging workflow
    • Replication workflow
    • Staging and replication workflow
  • Clean up
  • Configuration steps
  • Clean up Unarchiving Scratch Share
  • Deletion of archived Data Sets
  • Recovery from corrupted archiving queues
• Master data import/export
• Querying Project Database
  • Create Read-Only User in PostgreSQL
  • Enable Querying
  • Configure Authorization for Querying
• Share IDs
  • Motivation
  • Syntax
  • Resolving Rules
  • Example
• Sharing Databases
  • Introduction
  • Share Databases without Mapping File
  • Share Databases with Mapping File
    • Mapping all DSSs on one
    • Mapping all DSSs on one per module
    • Overwriting Parameters
    • Overwriting Generic Settings
• openBIS Sync
  • Introduction
  • Data Source Service Configuration
  • Use case: One Datasource - One or more Harvester
  • Data Source Service Document
  • Harvester Service Configuration
    • What HarvesterMaintenanceTask does
    • Master Data Synchronization Rules
• openBIS Logging
  • Runtime changes to logging