System Requirements
Operating System
We recommend to set up openBIS on a Linux operating system. We provide support for installing and operating openBIS on supported Ubuntu Server LTS releases .
Operating System: Linux / MacOS X
Third-Party Packages
The following software packages are required:
The binaries
bash,awk,sedandunzipneed to be installed and in thePATHof the openBIS user.Java Runtime Environment: OpenJDK 21
PostgreSQL 18 with prepared transactions functionality enabled
Microservices memory settings
openBIS operates as several separate services. Because each service reserves its own memory, the total available memory must be divided among them accordingly.
Application Server (AS)
RO-Crate Server (ROS)
Datastore Server (DSS)
Atomic File System Server (AFS)
All services share the same PostgreSQL database service.
CPU and Memory Configuration
Please bear in mind that recommended settings may vary from the suggested ones depending on how openBIS is used.
Take these as initial suggestions.
Concurrent Users |
Small |
Medium |
Big |
|---|---|---|---|
up to 5 concurrent users |
x |
x |
x |
up to 20 concurrent users |
x |
x |
|
more than 20 concurrent users |
x |
Small instance
Item |
Recommended Setting |
|---|---|
CPUs |
2 modern x86 CPU cores |
Total RAM |
6 GB |
Memory allocated to OS |
1.5 GB |
Memory allocated to PostgreSQL |
1 GB |
Memory allocated to AS |
2 GB |
Memory allocated to ROS |
0.5 GB |
Memory allocated to DSS |
0.5 GB |
Memory allocated to AFS |
0.5 GB |
Medium instance
Item |
Recommended Setting |
|---|---|
CPUs |
4 modern x86 CPU cores |
Total RAM |
10 GB |
Memory allocated to OS |
1.5 GB |
Memory allocated to PostgreSQL |
1.5 GB |
Memory allocated to AS |
4 GB |
Memory allocated to ROS |
1 GB |
Memory allocated to DSS |
1 GB |
Memory allocated to AFS |
1 GB |
Big instance
Item |
Recommended Setting |
|---|---|
CPUs |
8 modern x86 CPU cores |
Total RAM |
16 GB |
Memory allocated to OS |
2 GB |
Memory allocated to PostgreSQL |
2 GB |
Memory allocated to AS |
8 GB |
Memory allocated to ROS |
1 GB |
Memory allocated to DSS |
1 GB |
Memory allocated to AFS |
2 GB |
Postgres Memory Settings
Memory-related settings of your PostgreSQL server can be obtained from https://pgtune.leopard.in.ua/.
After clicking on “Generate”, you get the matching settings of the postgresql.conf displayed.
Example for 2 GB dedicated to PostgreSQL
# DB Version: 18
# OS Type: linux
# DB Type: web
# Total Memory (RAM): 2 GB
# CPUs num: 4
# Connections num: 50
# Data Storage: ssd
max_connections = 50
shared_buffers = 512MB
effective_cache_size = 1536MB
maintenance_work_mem = 128MB
checkpoint_completion_target = 0.9
wal_buffers = 16MB
default_statistics_target = 100
random_page_cost = 1.1
effective_io_concurrency = 200
work_mem = 9709kB
huge_pages = off
min_wal_size = 1GB
max_wal_size = 4GB
max_worker_processes = 4
max_parallel_workers_per_gather = 2
max_parallel_workers = 4
max_parallel_maintenance_workers = 2
Tuning Of Hardware Settings In Case Of Issues
Symptom |
Recommended Action |
|---|---|
Long query execution times |
Increase CPU number and/or AS & Postgres memory settings, reconfigure Postgres and openBIS memory settings following the recommended settings provided by https://pgtune.leopard.in.ua/. |
AS log shows out of memory errors |
Increase AS Memory. |
Service X log shows out of memory errors |
Increase service X Memory. |
Additional Requirements
An SMTP server needs to be accessible if you want openBIS to send out notifications via mail. We recommend to use the a local mail transfer agent such as Postfix configured for message sending.